STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA70408.1Lysophospholipase L1-like esterase; PFAM: GDSL-like Lipase/Acylhydrolase. (208 aa)    
Predicted Functional Partners:
AGA70747.1
Squalene cyclase.
  
     0.622
AGA69481.1
Small primase-like protein with Toprim domain; PFAM: Toprim domain.
  
     0.577
AGA70251.1
PFAM: Negative regulator of genetic competence (MecA).
  
     0.575
AGA70468.1
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
  
    0.574
AGA69507.1
Hypothetical protein.
  
     0.566
AGA70770.1
ABC-type sugar transport system, periplasmic component.
 
   
 0.564
AGA70409.1
Hypothetical protein; PFAM: YbaK / prolyl-tRNA synthetases associated domain.
       0.544
AGA69084.1
Putative transcriptional regulator containing CBS domains; PFAM: DRTGG domain; HTH domain; CBS domain.
  
     0.532
AGA69278.1
PFAM: N-acetylmuramoyl-L-alanine amidase; Putative cell wall binding repeat 2; Bacterial SH3 domain; TIGRFAM: N-acetylmuramoyl-L-alanine amidase CwlD.
 
   
 0.530
AGA69528.1
Hypothetical protein.
 
     0.524
Your Current Organism:
Desulfitobacterium dichloroeliminans
NCBI taxonomy Id: 871963
Other names: D. dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans DCA1, Desulfitobacterium dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans LMG P21439, Desulfitobacterium dichloroeliminans str. LMG P-21439, Desulfitobacterium dichloroeliminans strain LMG P-21439
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.