STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AGA70522.1Altronate dehydratase; PFAM: SAF domain. (98 aa)    
Predicted Functional Partners:
AGA70521.1
PFAM: D-galactarate dehydratase / Altronate hydrolase, C terminus.
 
  
  0.994
AGA70524.1
PFAM: D-galactarate dehydratase / Altronate hydrolase, C terminus.
 
  
  0.987
mdh
Malate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
     
  0.900
AGA69705.1
PFAM: D-galactarate dehydratase / Altronate hydrolase, C terminus.
 
     0.781
AGA70523.1
PFAM: Uncharacterized conserved protein (DUF2088).
       0.742
AGA70525.1
Altronate dehydratase; PFAM: SAF domain.
 
    
0.481
AGA70518.1
PFAM: Tripartite tricarboxylate transporter TctB family.
 
     0.417
Your Current Organism:
Desulfitobacterium dichloroeliminans
NCBI taxonomy Id: 871963
Other names: D. dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans DCA1, Desulfitobacterium dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans LMG P21439, Desulfitobacterium dichloroeliminans str. LMG P-21439, Desulfitobacterium dichloroeliminans strain LMG P-21439
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