STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA70537.1PFAM: Cell Wall Hydrolase; LysM domain. (300 aa)    
Predicted Functional Partners:
AGA70857.1
Hypothetical protein.
 
  
 0.764
AGA70808.1
Sporulation transcriptional regulator SpoIIID; PFAM: Stage III sporulation protein D.
  
  
 0.724
AGA69758.1
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
 
  
 0.715
AGA70529.1
PFAM: Stage II sporulation protein R (spore_II_R).
 
   
 0.715
AGA67670.1
Putative peptidoglycan-binding domain-containing protein; PFAM: Putative peptidoglycan binding domain; LysM domain.
 
   
 0.667
AGA69810.1
PFAM: SpoVA protein; TIGRFAM: stage V sporulation protein AC.
  
  
 0.632
AGA69794.1
PFAM: Sporulation protein YtfJ (Spore_YtfJ); TIGRFAM: sporulation protein YtfJ.
  
  
 0.628
AGA69809.1
PFAM: Stage V sporulation protein AD (SpoVAD); TIGRFAM: stage V sporulation protein AD.
  
  
 0.628
AGA69692.1
PFAM: Small, acid-soluble spore proteins, alpha/beta type.
  
    0.610
AGA68587.1
PFAM: Small, acid-soluble spore proteins, alpha/beta type.
  
    0.608
Your Current Organism:
Desulfitobacterium dichloroeliminans
NCBI taxonomy Id: 871963
Other names: D. dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans DCA1, Desulfitobacterium dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans LMG P21439, Desulfitobacterium dichloroeliminans str. LMG P-21439, Desulfitobacterium dichloroeliminans strain LMG P-21439
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.