Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGA70549.1Metalloendopeptidase-like membrane protein; PFAM: Peptidase family M23. (308 aa)    
Predicted Functional Partners:
AGA70550.1
Integral membrane protein CcmA involved in cell shape determination; PFAM: Protein of unknown function, DUF583.
 
   
 0.921
AGA70548.1
Uncharacterized integral membrane protein; PFAM: Protein of unknown function (DUF1049).
       0.775
AGA69300.1
Metalloendopeptidase-like membrane protein; PFAM: Peptidase family M23.
  
     0.616
AGA67747.1
Penicillin-binding protein, 1A family; PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase.
  
   
 0.576
AGA67938.1
Penicillin-binding protein, 1A family; PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase.
  
   
 0.538
AGA70551.1
PFAM: Putative peptidoglycan binding domain; VanW like protein; G5 domain.
  
    0.443
AGA70276.1
CheC, inhibitor of MCP methylation; PFAM: Surface presentation of antigens (SPOA); CheC-like family.
   
   0.401
Your Current Organism:
Desulfitobacterium dichloroeliminans
NCBI taxonomy Id: 871963
Other names: D. dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans DCA1, Desulfitobacterium dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans LMG P21439, Desulfitobacterium dichloroeliminans str. LMG P-21439, Desulfitobacterium dichloroeliminans strain LMG P-21439
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