STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA70555.1LysM domain-containing protein; PFAM: LysM domain. (525 aa)    
Predicted Functional Partners:
AGA69002.1
Hypothetical protein; PFAM: Domain of unknown function (DUF1508).
  
   0.802
AGA67611.1
Hypothetical protein; PFAM: 3D domain; Domain of unknown function (DUF348); G5 domain.
  
  
 0.706
AGA69871.1
Competence protein A.
  
     0.671
AGA67610.1
Hypothetical protein; PFAM: 3D domain; G5 domain.
   
  
 0.668
AGA70770.1
ABC-type sugar transport system, periplasmic component.
  
    0.663
AGA68703.1
PFAM: Protein of unknown function DUF88.
  
    0.647
AGA70387.1
PFAM: Protein involved in formate dehydrogenase formation.
  
     0.631
AGA69790.1
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase.
  
     0.618
AGA69452.1
Hypothetical protein.
  
     0.586
AGA70556.1
LysM domain-containing protein; PFAM: LysM domain.
 
   
 0.585
Your Current Organism:
Desulfitobacterium dichloroeliminans
NCBI taxonomy Id: 871963
Other names: D. dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans DCA1, Desulfitobacterium dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans LMG P21439, Desulfitobacterium dichloroeliminans str. LMG P-21439, Desulfitobacterium dichloroeliminans strain LMG P-21439
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.