Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGA70646.1PFAM: Bacterial regulatory proteins, tetR family. (191 aa)    
Predicted Functional Partners:
AGA70645.1
RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   
 0.712
AGA70659.1
Transcriptional regulator; PFAM: YsiA-like protein, C-terminal region; Bacterial regulatory proteins, tetR family.
  
     0.642
AGA70644.1
Cation/multidrug efflux pump; PFAM: AcrB/AcrD/AcrF family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
     
 0.565
AGA67913.1
PFAM: Bacterial regulatory proteins, tetR family.
  
     0.497
AGA70647.1
Putative membrane protein; PFAM: Protein of unknown function (DUF445).
       0.417
AGA68181.1
cAMP-binding protein; PFAM: Cyclic nucleotide-binding domain.
  
     0.415
Your Current Organism:
Desulfitobacterium dichloroeliminans
NCBI taxonomy Id: 871963
Other names: D. dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans DCA1, Desulfitobacterium dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans LMG P21439, Desulfitobacterium dichloroeliminans str. LMG P-21439, Desulfitobacterium dichloroeliminans strain LMG P-21439
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