Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGA70903.1PFAM: Tetratricopeptide repeat. (144 aa)    
Predicted Functional Partners:
AGA70904.1
Hydrogenase accessory protein HypB; PFAM: CobW/HypB/UreG, nucleotide-binding domain.
       0.778
hypA-2
Hydrogenase nickel insertion protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
       0.778
AGA69501.1
Flp pilus assembly protein TadD; PFAM: Tetratricopeptide repeat.
 
 
 0.741
AGA67763.1
Mg-chelatase subunit ChlD; PFAM: von Willebrand factor type A domain.
  
  
 0.648
AGA70906.1
Putative membrane protein.
       0.566
AGA70902.1
CBS domain-containing protein; PFAM: CBS domain.
       0.497
AGA69555.1
Hypothetical protein.
  
     0.475
AGA70539.1
C-terminal processing peptidase; PFAM: Peptidase family S41; Belongs to the peptidase S41A family.
  
 
 0.431
AGA70784.1
C-terminal processing peptidase; PFAM: Peptidase family S41; PDZ domain (Also known as DHR or GLGF); Belongs to the peptidase S41A family.
  
 
 0.431
AGA70907.1
Putative sporulation protein YyaC; PFAM: Protein of unknown function (DUF1256).
       0.411
Your Current Organism:
Desulfitobacterium dichloroeliminans
NCBI taxonomy Id: 871963
Other names: D. dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans DCA1, Desulfitobacterium dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans LMG P21439, Desulfitobacterium dichloroeliminans str. LMG P-21439, Desulfitobacterium dichloroeliminans strain LMG P-21439
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