STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHF06171.1Bile acid:sodium symporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (316 aa)    
Predicted Functional Partners:
AHF06170.1
NAD-dependent malic enzyme 4; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.503
AHF07978.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.486
AHF06169.1
L-malate permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.429
AHF06172.1
Cation-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.424
AHF06168.1
Response regulator in two-component regulatory system with DcuS; phosphorylated DcuR activates transcription of genes involved in anaerobic fumarate respiration; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.418
AHF06167.1
C4-dicarboxylate-sensing histidine kinase; part of two-component regulatory system with DcuR; regulates anaerobic fumarate respiration; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.416
Your Current Organism:
Desulfitobacterium metallireducens
NCBI taxonomy Id: 871968
Other names: D. metallireducens DSM 15288, Desulfitobacterium metallireducens 853-15A, Desulfitobacterium metallireducens ATCC BAA-636, Desulfitobacterium metallireducens DSM 15288, Desulfitobacterium metallireducens str. DSM 15288, Desulfitobacterium metallireducens strain DSM 15288
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.