STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHF06543.1AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (164 aa)    
Predicted Functional Partners:
AHF06542.1
Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.953
AHF06342.1
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.598
AHF06541.1
Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.430
AHF06540.1
ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.410
AHF07205.1
Porphyrin biosynthesis protein HemD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.405
Your Current Organism:
Desulfitobacterium metallireducens
NCBI taxonomy Id: 871968
Other names: D. metallireducens DSM 15288, Desulfitobacterium metallireducens 853-15A, Desulfitobacterium metallireducens ATCC BAA-636, Desulfitobacterium metallireducens DSM 15288, Desulfitobacterium metallireducens str. DSM 15288, Desulfitobacterium metallireducens strain DSM 15288
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.