Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KPL88032.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (373 aa)    
Predicted Functional Partners:
ganQ
Maltose ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.998
msmX-3
Glycerol-3-phosphate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
 
 0.976
msmX
Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
 
 0.974
KPL85789.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.974
msmX-2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
  
 0.971
KPL87286.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.967
KPL87654.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.963
KPL89771.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.927
KPL86289.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.920
KPL89339.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.918
Your Current Organism:
Ardenticatena maritima
NCBI taxonomy Id: 872965
Other names: A. maritima, ATCC BAA-2145, Ardenticatena maritima Kawaichi et al. 2013, DSM 23922, JCM 17282, KCTC 23289, NBRC 107679, filamentous thermophilic bacterium 110S, strain 110S
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