STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN50819.1Beta-galactosidase. (659 aa)    
Predicted Functional Partners:
SEN51406.1
Lysophospholipase L1.
 
    0.906
SEN50863.1
Uncharacterized membrane protein YesL.
  
    0.731
SEN70510.1
Beta-galactosidase.
    
 0.611
SEO63861.1
Beta-galactosidase.
    
 0.611
SEO52939.1
alpha-D-xyloside xylohydrolase; Belongs to the glycosyl hydrolase 31 family.
 
 
 0.609
SEO63335.1
alpha-D-xyloside xylohydrolase; Belongs to the glycosyl hydrolase 31 family.
 
 
 0.555
SEO15039.1
Alpha-galactosidase.
 
  
 0.551
SEO11771.1
Beta-galactosidase.
  
  
 
0.541
SEN50918.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-).
  
    0.540
SEO52884.1
Beta-galactosidase.
  
  
 
0.539
Your Current Organism:
Amphibacillus marinus
NCBI taxonomy Id: 872970
Other names: A. marinus, Amphibacillus marinus Ren et al. 2013, Amphibacillus sp. J1, CGMCC 1.10434, JCM 17099, strain J1
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