STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN54370.1Competence protein ComGB. (351 aa)    
Predicted Functional Partners:
SEN54332.1
Competence protein ComGA.
 
 
 0.989
SEO93793.1
Type IV pilus assembly protein PilB.
 
 
 0.951
SEN54418.1
Competence protein ComGC; Required for transformation and DNA binding.
 
  
 0.947
SEN54574.1
Competence protein ComGF.
  
  
 0.932
SEO93667.1
Leader peptidase (prepilin peptidase) / N-methyltransferase.
 
  
 0.804
SEN54462.1
Competence protein ComGD.
  
  
 0.766
SEO32717.1
Competence protein ComEC.
  
  
 0.754
SEO93696.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
 
  
 0.752
SEN54517.1
Hypothetical protein.
       0.726
SEO93764.1
Twitching motility protein PilT.
 
  
 0.717
Your Current Organism:
Amphibacillus marinus
NCBI taxonomy Id: 872970
Other names: A. marinus, Amphibacillus marinus Ren et al. 2013, Amphibacillus sp. J1, CGMCC 1.10434, JCM 17099, strain J1
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