Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SEN55164.1 | nfo | SAMN04488134_101336 | SAMN04488134_101350 | Superoxide dismutase, Fe-Mn family; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | Endonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. | 0.499 |
| SEN55641.1 | dinG | SAMN04488134_101351 | SAMN04488134_10181 | ATP-dependent RNA helicase CshB. | ATP-dependent DNA helicase DinG; 3'-5' exonuclease. | 0.509 |
| SEN55641.1 | ispH | SAMN04488134_101351 | SAMN04488134_101352 | ATP-dependent RNA helicase CshB. | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family. | 0.577 |
| SEN55641.1 | nfo | SAMN04488134_101351 | SAMN04488134_101350 | ATP-dependent RNA helicase CshB. | Endonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. | 0.851 |
| SEN55734.1 | nfo | SAMN04488134_101353 | SAMN04488134_101350 | Dinuclear metal center protein, YbgI/SA1388 family; Belongs to the GTP cyclohydrolase I type 2/NIF3 family. | Endonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. | 0.483 |
| SEO34880.1 | SEO53347.1 | SAMN04488134_106154 | SAMN04488134_108161 | single-stranded-DNA-specific exonuclease. | 5'-3' exonuclease. | 0.443 |
| SEO34880.1 | dinG | SAMN04488134_106154 | SAMN04488134_10181 | single-stranded-DNA-specific exonuclease. | ATP-dependent DNA helicase DinG; 3'-5' exonuclease. | 0.524 |
| SEO34880.1 | nfo | SAMN04488134_106154 | SAMN04488134_101350 | single-stranded-DNA-specific exonuclease. | Endonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. | 0.626 |
| SEO34880.1 | nth | SAMN04488134_106154 | SAMN04488134_10187 | single-stranded-DNA-specific exonuclease. | DNA-(apurinic or apyrimidinic site) lyase; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.491 |
| SEO34880.1 | polA | SAMN04488134_106154 | SAMN04488134_113117 | single-stranded-DNA-specific exonuclease. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.511 |
| SEO53347.1 | SEO34880.1 | SAMN04488134_108161 | SAMN04488134_106154 | 5'-3' exonuclease. | single-stranded-DNA-specific exonuclease. | 0.443 |
| SEO53347.1 | dinG | SAMN04488134_108161 | SAMN04488134_10181 | 5'-3' exonuclease. | ATP-dependent DNA helicase DinG; 3'-5' exonuclease. | 0.885 |
| SEO53347.1 | nfo | SAMN04488134_108161 | SAMN04488134_101350 | 5'-3' exonuclease. | Endonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. | 0.454 |
| SEO53347.1 | nth | SAMN04488134_108161 | SAMN04488134_10187 | 5'-3' exonuclease. | DNA-(apurinic or apyrimidinic site) lyase; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.663 |
| SEO53347.1 | polA | SAMN04488134_108161 | SAMN04488134_113117 | 5'-3' exonuclease. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.999 |
| dinG | SEN55641.1 | SAMN04488134_10181 | SAMN04488134_101351 | ATP-dependent DNA helicase DinG; 3'-5' exonuclease. | ATP-dependent RNA helicase CshB. | 0.509 |
| dinG | SEO34880.1 | SAMN04488134_10181 | SAMN04488134_106154 | ATP-dependent DNA helicase DinG; 3'-5' exonuclease. | single-stranded-DNA-specific exonuclease. | 0.524 |
| dinG | SEO53347.1 | SAMN04488134_10181 | SAMN04488134_108161 | ATP-dependent DNA helicase DinG; 3'-5' exonuclease. | 5'-3' exonuclease. | 0.885 |
| dinG | nfo | SAMN04488134_10181 | SAMN04488134_101350 | ATP-dependent DNA helicase DinG; 3'-5' exonuclease. | Endonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. | 0.524 |
| dinG | nth | SAMN04488134_10181 | SAMN04488134_10187 | ATP-dependent DNA helicase DinG; 3'-5' exonuclease. | DNA-(apurinic or apyrimidinic site) lyase; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.581 |
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