STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN56824.1Putative ABC transport system ATP-binding protein. (223 aa)    
Predicted Functional Partners:
SEO04130.1
Putative ABC transport system permease protein.
  
 0.991
SEN56864.1
Putative ABC transport system permease protein.
 
  0.977
SEN56781.1
Serine/threonine protein kinase.
 
     0.948
SEN83271.1
Acetoin utilization transport system permease protein.
  0.861
SEN82844.1
ABC-2 type transport system ATP-binding protein.
  
  
  0.689
SEO53380.1
Bacitracin transport system permease protein.
 
  0.656
SEN92130.1
ABC-2 type transport system ATP-binding protein.
  
  
  0.641
SEN67234.1
Polar amino acid transport system permease protein.
 
   
  0.627
SEN93542.1
Putative ABC transport system permease protein.
   
  0.600
SEO00775.1
Putative ABC transport system permease protein.
   
 
0.600
Your Current Organism:
Amphibacillus marinus
NCBI taxonomy Id: 872970
Other names: A. marinus, Amphibacillus marinus Ren et al. 2013, Amphibacillus sp. J1, CGMCC 1.10434, JCM 17099, strain J1
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