rpmB protein (Amphibacillus marinus) - STRING interaction network

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second shell of interactors

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Predicted Interactions

gene neighborhood

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textmining

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Score

rpmB

LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family. (62 aa)

Predicted Functional Partners:

rpmG

0.997

rpsO

0.997

rplS

0.997

rpsP

0.997

rpmF

0.997

rplU

0.997

rpsT

0.997

rplM

0.997

rpsF

0.995

rpsJ

0.994

Your Current Organism:

Amphibacillus marinus

NCBI taxonomy Id: 872970
Other names: A. marinus, Amphibacillus marinus Ren et al. 2013, Amphibacillus sp. J1, CGMCC 1.10434, JCM 17099, strain J1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplM	rplS	SAMN04488134_11253	SAMN04488134_101445	Large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.997
rplM	rplU	SAMN04488134_11253	SAMN04488134_106179	Large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.997
rplM	rpmB	SAMN04488134_11253	SAMN04488134_101466	Large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family.	0.997
rplM	rpmF	SAMN04488134_11253	SAMN04488134_101532	Large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family.	0.997
rplM	rpmG	SAMN04488134_11253	SAMN04488134_101332	Large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L33P; Belongs to the bacterial ribosomal protein bL33 family.	0.993
rplM	rpsF	SAMN04488134_11253	SAMN04488134_10766	Large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA.	0.997
rplM	rpsJ	SAMN04488134_11253	SAMN04488134_11288	Large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.997
rplM	rpsO	SAMN04488134_11253	SAMN04488134_101379	Large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.998
rplM	rpsP	SAMN04488134_11253	SAMN04488134_101449	Large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family.	0.997
rplM	rpsT	SAMN04488134_11253	SAMN04488134_10691	Large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Small subunit ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.997
rplS	rplM	SAMN04488134_101445	SAMN04488134_11253	LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	Large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.997
rplS	rplU	SAMN04488134_101445	SAMN04488134_106179	LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.998
rplS	rpmB	SAMN04488134_101445	SAMN04488134_101466	LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family.	0.997
rplS	rpmF	SAMN04488134_101445	SAMN04488134_101532	LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family.	0.997
rplS	rpmG	SAMN04488134_101445	SAMN04488134_101332	LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	LSU ribosomal protein L33P; Belongs to the bacterial ribosomal protein bL33 family.	0.984
rplS	rpsF	SAMN04488134_101445	SAMN04488134_10766	LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA.	0.997
rplS	rpsJ	SAMN04488134_101445	SAMN04488134_11288	LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.997
rplS	rpsO	SAMN04488134_101445	SAMN04488134_101379	LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.997
rplS	rpsP	SAMN04488134_101445	SAMN04488134_101449	LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family.	0.999
rplS	rpsT	SAMN04488134_101445	SAMN04488134_10691	LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	Small subunit ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.984