SEN83271.1 protein (Amphibacillus marinus) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

SEN83271.1

Acetoin utilization transport system permease protein. (447 aa)

Predicted Functional Partners:

SEN83237.1

0.979

SEN56824.1

0.861

SEO43298.1

0.775

SEO52188.1

0.710

SEN92395.1

0.705

SEO53415.1

0.700

SEN93575.1

0.691

SEO03431.1

0.684

SEN62736.1

0.669

SEO04097.1

0.653

Your Current Organism:

Amphibacillus marinus

NCBI taxonomy Id: 872970
Other names: A. marinus, Amphibacillus marinus Ren et al. 2013, Amphibacillus sp. J1, CGMCC 1.10434, JCM 17099, strain J1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEN56824.1	SEN83271.1	SAMN04488134_101376	SAMN04488134_10249	Putative ABC transport system ATP-binding protein.	Acetoin utilization transport system permease protein.	0.861
SEN62736.1	SEN83271.1	SAMN04488134_101507	SAMN04488134_10249	Putative ABC transport system ATP-binding protein.	Acetoin utilization transport system permease protein.	0.669
SEN83237.1	SEN83271.1	SAMN04488134_10248	SAMN04488134_10249	Acetoin utilization transport system ATP-binding protein.	Acetoin utilization transport system permease protein.	0.979
SEN83271.1	SEN56824.1	SAMN04488134_10249	SAMN04488134_101376	Acetoin utilization transport system permease protein.	Putative ABC transport system ATP-binding protein.	0.861
SEN83271.1	SEN62736.1	SAMN04488134_10249	SAMN04488134_101507	Acetoin utilization transport system permease protein.	Putative ABC transport system ATP-binding protein.	0.669
SEN83271.1	SEN83237.1	SAMN04488134_10249	SAMN04488134_10248	Acetoin utilization transport system permease protein.	Acetoin utilization transport system ATP-binding protein.	0.979
SEN83271.1	SEN92395.1	SAMN04488134_10249	SAMN04488134_102293	Acetoin utilization transport system permease protein.	Bacitracin transport system ATP-binding protein.	0.705
SEN83271.1	SEN93575.1	SAMN04488134_10249	SAMN04488134_102326	Acetoin utilization transport system permease protein.	Putative ABC transport system ATP-binding protein.	0.691
SEN83271.1	SEO03431.1	SAMN04488134_10249	SAMN04488134_103176	Acetoin utilization transport system permease protein.	Putative ABC transport system ATP-binding protein.	0.684
SEN83271.1	SEO04097.1	SAMN04488134_10249	SAMN04488134_103195	Acetoin utilization transport system permease protein.	Putative ABC transport system ATP-binding protein.	0.653
SEN83271.1	SEO43298.1	SAMN04488134_10249	SAMN04488134_107127	Acetoin utilization transport system permease protein.	Putative ABC transport system ATP-binding protein.	0.775
SEN83271.1	SEO52188.1	SAMN04488134_10249	SAMN04488134_108128	Acetoin utilization transport system permease protein.	Putative ABC transport system ATP-binding protein.	0.710
SEN83271.1	SEO53415.1	SAMN04488134_10249	SAMN04488134_108163	Acetoin utilization transport system permease protein.	Bacitracin transport system ATP-binding protein.	0.700
SEN92395.1	SEN83271.1	SAMN04488134_102293	SAMN04488134_10249	Bacitracin transport system ATP-binding protein.	Acetoin utilization transport system permease protein.	0.705
SEN93575.1	SEN83271.1	SAMN04488134_102326	SAMN04488134_10249	Putative ABC transport system ATP-binding protein.	Acetoin utilization transport system permease protein.	0.691
SEO03431.1	SEN83271.1	SAMN04488134_103176	SAMN04488134_10249	Putative ABC transport system ATP-binding protein.	Acetoin utilization transport system permease protein.	0.684
SEO04097.1	SEN83271.1	SAMN04488134_103195	SAMN04488134_10249	Putative ABC transport system ATP-binding protein.	Acetoin utilization transport system permease protein.	0.653
SEO43298.1	SEN83271.1	SAMN04488134_107127	SAMN04488134_10249	Putative ABC transport system ATP-binding protein.	Acetoin utilization transport system permease protein.	0.775
SEO52188.1	SEN83271.1	SAMN04488134_108128	SAMN04488134_10249	Putative ABC transport system ATP-binding protein.	Acetoin utilization transport system permease protein.	0.710
SEO53415.1	SEN83271.1	SAMN04488134_108163	SAMN04488134_10249	Bacitracin transport system ATP-binding protein.	Acetoin utilization transport system permease protein.	0.700

Network Stats

number of nodes:

11

number of edges:

55

average node degree:

10

avg. local clustering coefficient:

1

expected number of edges:

39

PPI enrichment p-value:

0.00276

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006412

Translation

11 of 69

1.13

1.58

5.32e-10

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003735

Structural constituent of ribosome

11 of 41

1.35

2.42

1.40e-12

GO:0019843

rRNA binding

10 of 35

1.38

2.42

2.20e-11

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005840

Ribosome

11 of 43

1.33

2.38

5.10e-13

GO:0044391

Ribosomal subunit

3 of 10

1.4

1.07

0.0027

GO:0015935

Small ribosomal subunit

2 of 5

1.52

0.86

0.0149

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:89

Structural constituent of ribosome

10 of 31

1.43

2.61

1.69e-11

CL:91

Structural constituent of ribosome

7 of 19

1.49

2.35

2.41e-08

CL:93

rRNA-binding

5 of 12

1.54

1.97

5.31e-06

CL:81

Ribosome, and Transcription, DNA-templated

11 of 57

1.21

1.89

1.69e-11

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map03010

Ribosome

11 of 43

1.33

2.38

5.45e-13

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005840

Ribosome

9 of 29

1.41

2.38

6.05e-10

GOCC:0022626

Cytosolic ribosome

4 of 9

1.57

1.64

0.00011

GOCC:0044391

Ribosomal subunit

4 of 12

1.45

1.42

0.00024

GOCC:0043229

Intracellular organelle

11 of 82

1.05

1.39

6.05e-10

GOCC:0022625

Cytosolic large ribosomal subunit

2 of 3

1.75

0.96

0.0122

(more ...)

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0699

rRNA-binding

10 of 32

1.42

2.62

4.35e-12

KW-0689

Ribosomal protein

11 of 44

1.32

2.32

1.19e-12

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