STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO02097.1L-fuculose-phosphate aldolase. (212 aa)    
Predicted Functional Partners:
fucI
L-fucose isomerase; Converts the aldose L-fucose into the corresponding ketose L- fuculose.
 
 
 0.899
xylB
Xylulokinase.
  
 
 0.800
SEO02172.1
Rhamnulokinase.
 
 
 0.796
SEO17750.1
Glyoxalase family protein.
  
 
 0.791
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.776
SEN60987.1
Ribulose-5-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
     
 0.755
SEN85921.1
Acetaldehyde dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 0.642
SEO02063.1
Transcriptional regulator, DeoR family.
  
  
 0.625
SEO07031.1
Sugar (pentulose or hexulose) kinase.
  
 
 0.585
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
  
 
 0.541
Your Current Organism:
Amphibacillus marinus
NCBI taxonomy Id: 872970
Other names: A. marinus, Amphibacillus marinus Ren et al. 2013, Amphibacillus sp. J1, CGMCC 1.10434, JCM 17099, strain J1
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