STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO52024.1DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. (208 aa)    
Predicted Functional Partners:
SEO52058.1
Signal transduction histidine kinase.
 0.981
SEO85585.1
Two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR.
 0.921
SEN67861.1
His Kinase A (phospho-acceptor) domain-containing protein.
 0.918
SEN41626.1
Two-component system, OmpR family, sensor histidine kinase ResE.
 0.908
SEO58073.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.892
SEN83535.1
Signal transduction histidine kinase.
 0.884
SEN93620.1
Signal transduction histidine kinase.
 
 0.883
SEO86922.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 0.881
SEO56932.1
Signal transduction histidine kinase.
  
 0.878
SEO00949.1
PAS domain S-box-containing protein.
  
 0.871
Your Current Organism:
Amphibacillus marinus
NCBI taxonomy Id: 872970
Other names: A. marinus, Amphibacillus marinus Ren et al. 2013, Amphibacillus sp. J1, CGMCC 1.10434, JCM 17099, strain J1
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