STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO48353.1Small, acid-soluble spore protein, alpha/beta type. (66 aa)    
Predicted Functional Partners:
SEO31058.1
Spore coat protein E.
  
    0.772
SEO22402.1
Spore germination protein Q.
  
    0.763
SEN82395.1
Outer membrane lipoprotein-sorting protein.
  
     0.759
SEO22426.1
N-acetylmuramoyl-L-alanine amidase.
  
    0.733
SEN63862.1
Transcription factor, RsfA family.
  
     0.717
SEO71606.1
Peptidase family M23.
  
     0.706
SEO34425.1
Prespore-specific regulator.
  
     0.700
SEO74036.1
Spore germination protein D.
  
   
 0.645
SEN41140.1
Stage V sporulation protein AF.
  
     0.568
SEO30884.1
Protein YqhG of unknown function.
  
     0.561
Your Current Organism:
Amphibacillus marinus
NCBI taxonomy Id: 872970
Other names: A. marinus, Amphibacillus marinus Ren et al. 2013, Amphibacillus sp. J1, CGMCC 1.10434, JCM 17099, strain J1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.