STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO63289.1Abhydrolase family protein. (340 aa)    
Predicted Functional Partners:
SEN53407.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
 
     0.741
SEO63335.1
alpha-D-xyloside xylohydrolase; Belongs to the glycosyl hydrolase 31 family.
 
     0.704
SEN51164.1
Putative aldouronate transport system substrate-binding protein.
 
     0.667
SEO63369.1
Unsaturated chondroitin disaccharide hydrolase.
       0.626
SEN51014.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-).
 
     0.603
SEN53479.1
Transcriptional regulator, AraC family.
  
     0.599
SEO63400.1
Xylan 1,4-beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
     
 0.551
SEO63432.1
Hypothetical protein.
       0.537
SEN70479.1
Heparinase II/III-like protein.
 
     0.532
SEN53529.1
Oxidoreductase family, C-terminal alpha/beta domain.
 
     0.496
Your Current Organism:
Amphibacillus marinus
NCBI taxonomy Id: 872970
Other names: A. marinus, Amphibacillus marinus Ren et al. 2013, Amphibacillus sp. J1, CGMCC 1.10434, JCM 17099, strain J1
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