STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO71360.1Iron-regulated ABC transporter membrane component SufB. (465 aa)    
Predicted Functional Partners:
SEO71235.1
Fe-S cluster assembly ATP-binding protein.
 
 0.999
SEO71302.1
Cysteine desulfurase / selenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 0.998
SEO71334.1
Nitrogen fixation protein NifU.
 
  
 0.966
SEO71268.1
Fe-S cluster assembly protein SufD.
 
  
0.958
SEO15553.1
Selenocysteine lyase/Cysteine desulfurase.
 
 0.858
SEO50378.1
Metal-sulfur cluster biosynthetic enzyme.
 
   
 0.732
SEN72185.1
Fe-S cluster assembly iron-binding protein IscA.
  
 
 0.568
SEO71875.1
Iron-sulfur cluster assembly protein; Belongs to the HesB/IscA family.
  
 
 0.568
Your Current Organism:
Amphibacillus marinus
NCBI taxonomy Id: 872970
Other names: A. marinus, Amphibacillus marinus Ren et al. 2013, Amphibacillus sp. J1, CGMCC 1.10434, JCM 17099, strain J1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.