STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO79934.1NlpC/P60 family protein. (220 aa)    
Predicted Functional Partners:
SEO79977.1
Hypothetical protein.
       0.773
SEO80010.1
Hypothetical protein.
       0.773
SEO80038.1
Hypothetical protein.
       0.773
SEO80072.1
Hypothetical protein.
       0.773
SEO80103.1
Hypothetical protein.
       0.773
SEO92565.1
Uncharacterized conserved protein YabE, contains G5 and tandem DUF348 domains.
 
  
 0.749
SEO07063.1
Pectate lyase.
     
 0.721
SEN44707.1
Cell wall-associated hydrolase, NlpC family.
 
  
0.657
SEO80345.1
Hypothetical protein.
  
 
 0.650
ftsE
Cell division transport system ATP-binding protein; Part of the ABC transporter FtsEX involved in cellular division.
  
  
 0.634
Your Current Organism:
Amphibacillus marinus
NCBI taxonomy Id: 872970
Other names: A. marinus, Amphibacillus marinus Ren et al. 2013, Amphibacillus sp. J1, CGMCC 1.10434, JCM 17099, strain J1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.