STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO83811.1Nuclease-related domain-containing protein. (307 aa)    
Predicted Functional Partners:
SEO83780.1
2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.
  
    0.796
SEO52325.1
Flagellar protein FliT.
  
    0.791
SEO83744.1
DeoR-like helix-turn-helix domain-containing protein.
 
     0.786
SEN58617.1
Flagellar FliL protein.
  
    0.780
SEN57755.1
Hypothetical protein.
  
     0.775
SEN58932.1
Flagellar FliJ protein.
  
     0.774
SEN55026.1
Hypothetical protein.
  
     0.770
SEN64486.1
Uncharacterized protein YlaI.
  
     0.770
SEO78702.1
Hypothetical protein.
  
     0.769
SEO78862.1
Hypothetical protein.
  
     0.769
Your Current Organism:
Amphibacillus marinus
NCBI taxonomy Id: 872970
Other names: A. marinus, Amphibacillus marinus Ren et al. 2013, Amphibacillus sp. J1, CGMCC 1.10434, JCM 17099, strain J1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.