STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGJ27150.1DNA (cytosine-5-)-methyltransferase; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195. (418 aa)    
Predicted Functional Partners:
EGJ27991.1
Hypothetical protein.
 
  
 0.944
clpP_1
ATP-dependent Clp endopeptidase, proteolytic subunit ClpP; Identified by match to protein family HMM PF00574.
 
   
 0.866
EGJ26399.1
Phage portal protein, HK97 family; Identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537.
 
  
 0.845
EGJ28328.1
Putative phage terminase, large subunit; Identified by match to protein family HMM PF03354.
 
     0.829
EGJ26582.1
Phage major capsid protein, HK97 family; Identified by match to protein family HMM PF05065; match to protein family HMM TIGR01554.
 
    0.823
EGJ28155.1
Hypothetical protein.
 
    0.803
EGJ28005.1
Phage/plasmid primase, P4 family, C-terminal domain protein; Identified by match to protein family HMM PF08706; match to protein family HMM TIGR01613.
 
    0.788
EGJ26509.1
Toxin secretion/phage lysis holin; Identified by match to protein family HMM PF05105; match to protein family HMM TIGR01593.
 
    0.763
EGJ27455.1
Resolvase, N-terminal domain protein; Identified by match to protein family HMM PF00239; match to protein family HMM PF07508; overlaps another CDS with the same product name.
 
  
 0.762
EGJ27600.1
VRR-NUC domain protein; Identified by match to protein family HMM PF08774.
 
     0.758
Your Current Organism:
Streptococcus porcinus
NCBI taxonomy Id: 873448
Other names: S. porcinus str. Jelinkova 176, Streptococcus porcinus str. Jelinkova 176, Streptococcus porcinus strain Jelinkova 176
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.