Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EGJ26857.1 | EGJ26919.1 | STRPO_0054 | STRPO_0068 | Modification methylase Rho11sI family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts. | Hypothetical protein. | 0.522 |
| EGJ26857.1 | EGJ27041.1 | STRPO_0054 | STRPO_0059 | Modification methylase Rho11sI family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts. | Phage terminase, small subunit, P27 family; Identified by match to protein family HMM TIGR01558. | 0.682 |
| EGJ26857.1 | EGJ27150.1 | STRPO_0054 | STRPO_0052 | Modification methylase Rho11sI family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts. | DNA (cytosine-5-)-methyltransferase; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195. | 0.692 |
| EGJ26857.1 | EGJ27484.1 | STRPO_0054 | STRPO_0055 | Modification methylase Rho11sI family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts. | Hypothetical protein. | 0.581 |
| EGJ26857.1 | EGJ27991.1 | STRPO_0054 | STRPO_0051 | Modification methylase Rho11sI family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts. | Hypothetical protein. | 0.711 |
| EGJ26857.1 | EGJ28244.1 | STRPO_0054 | STRPO_0053 | Modification methylase Rho11sI family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts. | Prophage LambdaSa04, methyltransferase, C-5 cytosine-specific family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts. | 0.946 |
| EGJ26857.1 | EGJ28328.1 | STRPO_0054 | STRPO_0060 | Modification methylase Rho11sI family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts. | Putative phage terminase, large subunit; Identified by match to protein family HMM PF03354. | 0.512 |
| EGJ26857.1 | hpaIIM | STRPO_0054 | STRPO_2021 | Modification methylase Rho11sI family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts. | Modification methylase HpaII; Identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675. | 0.734 |
| EGJ26857.1 | metK_2 | STRPO_0054 | STRPO_1999 | Modification methylase Rho11sI family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts. | Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. | 0.700 |
| EGJ26857.1 | mtnN | STRPO_0054 | STRPO_0816 | Modification methylase Rho11sI family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts. | MTA/SAH nucleosidase; Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S-adenosylhomocysteine (SAH/AdoHcy) to adenine and the corresponding thioribose, 5'- methylthioribose and S-ribosylhomocysteine, respectively. Belongs to the PNP/UDP phosphorylase family. MtnN subfamily. | 0.694 |
| EGJ26919.1 | EGJ26857.1 | STRPO_0068 | STRPO_0054 | Hypothetical protein. | Modification methylase Rho11sI family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts. | 0.522 |
| EGJ26919.1 | EGJ27041.1 | STRPO_0068 | STRPO_0059 | Hypothetical protein. | Phage terminase, small subunit, P27 family; Identified by match to protein family HMM TIGR01558. | 0.572 |
| EGJ26919.1 | EGJ28244.1 | STRPO_0068 | STRPO_0053 | Hypothetical protein. | Prophage LambdaSa04, methyltransferase, C-5 cytosine-specific family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts. | 0.432 |
| EGJ26919.1 | EGJ28328.1 | STRPO_0068 | STRPO_0060 | Hypothetical protein. | Putative phage terminase, large subunit; Identified by match to protein family HMM PF03354. | 0.695 |
| EGJ27041.1 | EGJ26857.1 | STRPO_0059 | STRPO_0054 | Phage terminase, small subunit, P27 family; Identified by match to protein family HMM TIGR01558. | Modification methylase Rho11sI family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts. | 0.682 |
| EGJ27041.1 | EGJ26919.1 | STRPO_0059 | STRPO_0068 | Phage terminase, small subunit, P27 family; Identified by match to protein family HMM TIGR01558. | Hypothetical protein. | 0.572 |
| EGJ27041.1 | EGJ27150.1 | STRPO_0059 | STRPO_0052 | Phage terminase, small subunit, P27 family; Identified by match to protein family HMM TIGR01558. | DNA (cytosine-5-)-methyltransferase; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195. | 0.681 |
| EGJ27041.1 | EGJ27991.1 | STRPO_0059 | STRPO_0051 | Phage terminase, small subunit, P27 family; Identified by match to protein family HMM TIGR01558. | Hypothetical protein. | 0.678 |
| EGJ27041.1 | EGJ28244.1 | STRPO_0059 | STRPO_0053 | Phage terminase, small subunit, P27 family; Identified by match to protein family HMM TIGR01558. | Prophage LambdaSa04, methyltransferase, C-5 cytosine-specific family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts. | 0.728 |
| EGJ27041.1 | EGJ28328.1 | STRPO_0059 | STRPO_0060 | Phage terminase, small subunit, P27 family; Identified by match to protein family HMM TIGR01558. | Putative phage terminase, large subunit; Identified by match to protein family HMM PF03354. | 0.951 |
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