STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGJ28259.1Phage minor structural protein, N-terminal domain protein; Identified by match to protein family HMM TIGR01665. (972 aa)    
Predicted Functional Partners:
EGJ27901.1
Phage tail tape measure protein, TP901 family; Identified by match to protein family HMM PF05017; match to protein family HMM TIGR01760.
 
 
 0.967
EGJ26935.1
Putative phage tail component, N-terminal domain protein.
  
   0.948
EGJ28288.1
Putative phage DNA packaging protein.
  
 
 0.917
EGJ26839.1
Identified by match to protein family HMM PF00657.
  
   0.830
EGJ27000.1
Identified by match to protein family HMM PF00657.
  
   0.830
EGJ26509.1
Toxin secretion/phage lysis holin; Identified by match to protein family HMM PF05105; match to protein family HMM TIGR01593.
 
    0.821
EGJ27544.1
Putative phage tail component, N-terminal domain protein; Identified by match to protein family HMM PF05709; match to protein family HMM TIGR01633.
  
   0.768
EGJ26491.1
LysM domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF01476.
  
    0.763
EGJ27186.1
Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF05895.
       0.760
EGJ27819.1
Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF01832.
  
    0.716
Your Current Organism:
Streptococcus porcinus
NCBI taxonomy Id: 873448
Other names: S. porcinus str. Jelinkova 176, Streptococcus porcinus str. Jelinkova 176, Streptococcus porcinus strain Jelinkova 176
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.