Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EGJ26488.1 | EGJ27100.1 | STRPO_0084 | STRPO_1501 | Methyltransferase domain protein; Identified by match to protein family HMM PF08241; match to protein family HMM PF08242. | Putative 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Identified by match to protein family HMM PF01040. | 0.752 |
| EGJ26488.1 | EGJ27775.1 | STRPO_0084 | STRPO_0490 | Methyltransferase domain protein; Identified by match to protein family HMM PF08241; match to protein family HMM PF08242. | AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550. | 0.441 |
| EGJ26488.1 | birA | STRPO_0084 | STRPO_1997 | Methyltransferase domain protein; Identified by match to protein family HMM PF08241; match to protein family HMM PF08242. | biotin--[acetyl-CoA-carboxylase] ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family. | 0.463 |
| EGJ26488.1 | fabF | STRPO_0084 | STRPO_1053 | Methyltransferase domain protein; Identified by match to protein family HMM PF08241; match to protein family HMM PF08242. | Beta-ketoacyl-acyl-carrier-protein synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. | 0.693 |
| EGJ26488.1 | gshAB | STRPO_0084 | STRPO_1546 | Methyltransferase domain protein; Identified by match to protein family HMM PF08241; match to protein family HMM PF08242. | Glutamate--cysteine ligase/gamma-glutamylcysteine synthetase; Synthesizes glutathione from L-glutamate and L-cysteine via gamma-L-glutamyl-L-cysteine; In the N-terminal section; belongs to the glutamate--cysteine ligase type 1 family. Type 2 subfamily. | 0.790 |
| EGJ26488.1 | hepT | STRPO_0084 | STRPO_1507 | Methyltransferase domain protein; Identified by match to protein family HMM PF08241; match to protein family HMM PF08242. | Polyprenyl synthetase; Identified by match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family. | 0.489 |
| EGJ26488.1 | luxS | STRPO_0084 | STRPO_0964 | Methyltransferase domain protein; Identified by match to protein family HMM PF08241; match to protein family HMM PF08242. | S-ribosylhomocysteinase LuxS; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family. | 0.502 |
| EGJ26488.1 | metK_1 | STRPO_0084 | STRPO_0049 | Methyltransferase domain protein; Identified by match to protein family HMM PF08241; match to protein family HMM PF08242. | Methionine adenosyltransferase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00438; match to protein family HMM PF02772; match to protein family HMM PF02773; match to protein family HMM TIGR01034. | 0.491 |
| EGJ26488.1 | metK_2 | STRPO_0084 | STRPO_1999 | Methyltransferase domain protein; Identified by match to protein family HMM PF08241; match to protein family HMM PF08242. | Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. | 0.491 |
| EGJ26488.1 | mtnN | STRPO_0084 | STRPO_0816 | Methyltransferase domain protein; Identified by match to protein family HMM PF08241; match to protein family HMM PF08242. | MTA/SAH nucleosidase; Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S-adenosylhomocysteine (SAH/AdoHcy) to adenine and the corresponding thioribose, 5'- methylthioribose and S-ribosylhomocysteine, respectively. Belongs to the PNP/UDP phosphorylase family. MtnN subfamily. | 0.763 |
| EGJ27100.1 | EGJ26488.1 | STRPO_1501 | STRPO_0084 | Putative 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Identified by match to protein family HMM PF01040. | Methyltransferase domain protein; Identified by match to protein family HMM PF08241; match to protein family HMM PF08242. | 0.752 |
| EGJ27100.1 | hepT | STRPO_1501 | STRPO_1507 | Putative 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Identified by match to protein family HMM PF01040. | Polyprenyl synthetase; Identified by match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family. | 0.942 |
| EGJ27775.1 | EGJ26488.1 | STRPO_0490 | STRPO_0084 | AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550. | Methyltransferase domain protein; Identified by match to protein family HMM PF08241; match to protein family HMM PF08242. | 0.441 |
| EGJ27775.1 | birA | STRPO_0490 | STRPO_1997 | AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550. | biotin--[acetyl-CoA-carboxylase] ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family. | 0.596 |
| EGJ27775.1 | fabF | STRPO_0490 | STRPO_1053 | AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550. | Beta-ketoacyl-acyl-carrier-protein synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. | 0.802 |
| EGJ27775.1 | gshAB | STRPO_0490 | STRPO_1546 | AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550. | Glutamate--cysteine ligase/gamma-glutamylcysteine synthetase; Synthesizes glutathione from L-glutamate and L-cysteine via gamma-L-glutamyl-L-cysteine; In the N-terminal section; belongs to the glutamate--cysteine ligase type 1 family. Type 2 subfamily. | 0.513 |
| birA | EGJ26488.1 | STRPO_1997 | STRPO_0084 | biotin--[acetyl-CoA-carboxylase] ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family. | Methyltransferase domain protein; Identified by match to protein family HMM PF08241; match to protein family HMM PF08242. | 0.463 |
| birA | EGJ27775.1 | STRPO_1997 | STRPO_0490 | biotin--[acetyl-CoA-carboxylase] ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family. | AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550. | 0.596 |
| birA | fabF | STRPO_1997 | STRPO_1053 | biotin--[acetyl-CoA-carboxylase] ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family. | Beta-ketoacyl-acyl-carrier-protein synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. | 0.580 |
| birA | metK_1 | STRPO_1997 | STRPO_0049 | biotin--[acetyl-CoA-carboxylase] ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family. | Methionine adenosyltransferase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00438; match to protein family HMM PF02772; match to protein family HMM PF02773; match to protein family HMM TIGR01034. | 0.516 |
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