STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGJ28224.1Matrixin; Identified by match to protein family HMM PF00413. (243 aa)    
Predicted Functional Partners:
frmB
Putative esterase; Identified by match to protein family HMM PF00756.
       0.755
gtfB
Accessory Sec system glycosyltransferase GtfB; Identified by match to protein family HMM TIGR02919.
  
     0.653
endA
DNA/RNA non-specific endonuclease; Identified by match to protein family HMM PF01223.
  
     0.610
yheS_3
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
       0.564
EGJ27502.1
Hypothetical protein.
  
     0.541
EGJ27324.1
Antibiotic biosynthesis monooxygenase; Identified by match to protein family HMM PF03992.
  
     0.528
gtfA
Accessory Sec system glycosylation protein GtfA; Identified by match to protein family HMM PF00534; match to protein family HMM PF09318; match to protein family HMM TIGR02918.
  
     0.517
rnjB
Ribonuclease J 2; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.
       0.485
EGJ27112.1
Identified by match to protein family HMM PF06028.
  
     0.456
EGJ26629.1
Identified by match to protein family HMM PF01580.
  
     0.456
Your Current Organism:
Streptococcus porcinus
NCBI taxonomy Id: 873448
Other names: S. porcinus str. Jelinkova 176, Streptococcus porcinus str. Jelinkova 176, Streptococcus porcinus strain Jelinkova 176
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.