STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGJ27698.1SNARE-like domain protein; Identified by match to protein family HMM PF09335. (215 aa)    
Predicted Functional Partners:
EGJ27566.1
Glycosyltransferase, group 1 family protein; Identified by match to protein family HMM PF00534.
 
  
 0.662
yjbK
Adenylate cyclase; Identified by match to protein family HMM PF01928.
  
     0.540
plsC
Acyltransferase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01553.
    
 0.534
EGJ27218.1
Identified by match to protein family HMM PF08860.
  
     0.497
EGJ28217.1
Identified by match to protein family HMM PF06619.
  
     0.493
cls
Identified by match to protein family HMM PF00614; Belongs to the phospholipase D family. Cardiolipin synthase subfamily.
    
  0.477
EGJ26559.1
Hypothetical protein.
  
   
 0.462
pimB
Glycosyltransferase, group 1 family protein; Identified by match to protein family HMM PF00534.
 
    0.441
Your Current Organism:
Streptococcus porcinus
NCBI taxonomy Id: 873448
Other names: S. porcinus str. Jelinkova 176, Streptococcus porcinus str. Jelinkova 176, Streptococcus porcinus strain Jelinkova 176
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