STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lolD_1ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (233 aa)    
Predicted Functional Partners:
EGJ28167.1
Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
 
 0.999
macB_2
Putative macrolide export ATP-binding/permease protein MacB; Identified by match to protein family HMM PF02687.
 0.981
EGJ27931.1
Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
  
 0.902
EGJ26634.1
Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
  
 0.828
EGJ26703.1
Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM TIGR01730.
  
 
 0.794
glnP_1
Lysine-arginine-ornithine-binding periplasmic protein; Identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 
 
 0.778
glnP_2
ABC transporter, permease protein; Identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 
 
 0.778
gsiA_2
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
    
0.609
yvdT
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
   
   0.603
EGJ26533.1
Identified by match to protein family HMM PF06081.
       0.508
Your Current Organism:
Streptococcus porcinus
NCBI taxonomy Id: 873448
Other names: S. porcinus str. Jelinkova 176, Streptococcus porcinus str. Jelinkova 176, Streptococcus porcinus strain Jelinkova 176
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.