STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scpA_1Putative c5a peptidase; Identified by match to protein family HMM PF00082; match to protein family HMM PF02225; match to protein family HMM PF06280. (1130 aa)    
Predicted Functional Partners:
EGJ26966.1
Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.
   
 0.893
EGJ26556.1
Putative serine-aspartate repeat protein F; Identified by match to protein family HMM PF05738; match to protein family HMM TIGR01167; match to protein family HMM TIGR03715.
 
 0.848
EGJ27952.1
Prophage LambdaSa1, structural protein.
  
 0.826
EGJ27303.1
Putative lipoprotein.
  
 0.826
EGJ26949.1
LPXTG-motif cell wall anchor domain protein; Identified by match to protein family HMM PF00746; match to protein family HMM PF01391; match to protein family HMM TIGR01167.
  
 
 0.639
secY
Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
    
   0.520
secY2
Accessory Sec system translocase SecY2; Part of the accessory SecA2/SecY2 system specifically required for export of possible cell wall proteins. The central subunit of a protein translocation channel.
    
   0.520
spoIIIE
Stage III sporulation protein E; Identified by match to protein family HMM PF01580; match to protein family HMM PF09397; Belongs to the FtsK/SpoIIIE/SftA family.
  
 
 0.512
EGJ26629.1
Identified by match to protein family HMM PF01580.
  
 
 0.512
xylG
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
       0.452
Your Current Organism:
Streptococcus porcinus
NCBI taxonomy Id: 873448
Other names: S. porcinus str. Jelinkova 176, Streptococcus porcinus str. Jelinkova 176, Streptococcus porcinus strain Jelinkova 176
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.