STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGJ26634.1Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687. (651 aa)    
Predicted Functional Partners:
lolD_2
Putative bacteriocin ABC transporter; Identified by match to protein family HMM PF00005.
 
 0.995
EGJ27079.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF02518.
 
 
 
 0.925
graR
Putative response regulator protein GraR; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
 
     0.891
EGJ26703.1
Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM TIGR01730.
  
 
 0.867
macB_1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 0.831
macB_3
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 0.829
lolD_1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 0.828
EGJ27902.1
Hypothetical protein.
       0.548
EGJ27355.1
S4 domain protein; Identified by match to protein family HMM PF01479.
  
    0.512
EGJ27605.1
Response regulator receiver domain protein; Identified by match to protein family HMM PF00072.
 
     0.481
Your Current Organism:
Streptococcus porcinus
NCBI taxonomy Id: 873448
Other names: S. porcinus str. Jelinkova 176, Streptococcus porcinus str. Jelinkova 176, Streptococcus porcinus strain Jelinkova 176
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.