STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGJ26839.1Identified by match to protein family HMM PF00657. (204 aa)    
Predicted Functional Partners:
EGJ28288.1
Putative phage DNA packaging protein.
  
 0.835
EGJ28259.1
Phage minor structural protein, N-terminal domain protein; Identified by match to protein family HMM TIGR01665.
  
   0.830
EGJ27901.1
Phage tail tape measure protein, TP901 family; Identified by match to protein family HMM PF05017; match to protein family HMM TIGR01760.
   
   0.695
EGJ26556.1
Putative serine-aspartate repeat protein F; Identified by match to protein family HMM PF05738; match to protein family HMM TIGR01167; match to protein family HMM TIGR03715.
  
  0.688
EGJ27952.1
Prophage LambdaSa1, structural protein.
   
  0.632
EGJ27303.1
Putative lipoprotein.
   
  0.632
EGJ27211.1
6-phospho-beta-glucosidase; Identified by match to protein family HMM PF00232.
    
 0.606
rob
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165; match to protein family HMM PF02311.
 
    0.568
EGJ26935.1
Putative phage tail component, N-terminal domain protein.
  
   0.544
EGJ27544.1
Putative phage tail component, N-terminal domain protein; Identified by match to protein family HMM PF05709; match to protein family HMM TIGR01633.
  
   0.544
Your Current Organism:
Streptococcus porcinus
NCBI taxonomy Id: 873448
Other names: S. porcinus str. Jelinkova 176, Streptococcus porcinus str. Jelinkova 176, Streptococcus porcinus strain Jelinkova 176
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