EGJ28060.1 protein (Streptococcus porcinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EGJ28060.1

ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (572 aa)

Predicted Functional Partners:

EGJ26925.1

0.937

EGJ27392.1

0.918

msbA

0.854

ykoD_1

0.844

yfiR

0.826

EGJ27103.1

0.778

atmD

0.605

dnaK

0.528

EGJ27775.1

0.469

ecsA_2

0.466

Your Current Organism:

Streptococcus porcinus

NCBI taxonomy Id: 873448
Other names: S. porcinus str. Jelinkova 176, Streptococcus porcinus str. Jelinkova 176, Streptococcus porcinus strain Jelinkova 176

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EGJ26925.1	EGJ27392.1	STRPO_0487	STRPO_0485	Cobalt transport protein; Identified by match to protein family HMM PF02361.	Conserved hypothetical integral membrane protein TIGR02185; Identified by match to protein family HMM PF09605; match to protein family HMM TIGR02185.	0.944
EGJ26925.1	EGJ28060.1	STRPO_0487	STRPO_0483	Cobalt transport protein; Identified by match to protein family HMM PF02361.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.937
EGJ26925.1	msbA	STRPO_0487	STRPO_0484	Cobalt transport protein; Identified by match to protein family HMM PF02361.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.941
EGJ26925.1	yfiR	STRPO_0487	STRPO_0482	Cobalt transport protein; Identified by match to protein family HMM PF02361.	Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.	0.807
EGJ26925.1	ykoD_1	STRPO_0487	STRPO_0486	Cobalt transport protein; Identified by match to protein family HMM PF02361.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.987
EGJ27103.1	EGJ28060.1	STRPO_1239	STRPO_0483	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.778
EGJ27103.1	dnaK	STRPO_1239	STRPO_1062	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.506
EGJ27103.1	msbA	STRPO_1239	STRPO_0484	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.770
EGJ27392.1	EGJ26925.1	STRPO_0485	STRPO_0487	Conserved hypothetical integral membrane protein TIGR02185; Identified by match to protein family HMM PF09605; match to protein family HMM TIGR02185.	Cobalt transport protein; Identified by match to protein family HMM PF02361.	0.944
EGJ27392.1	EGJ28060.1	STRPO_0485	STRPO_0483	Conserved hypothetical integral membrane protein TIGR02185; Identified by match to protein family HMM PF09605; match to protein family HMM TIGR02185.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.918
EGJ27392.1	msbA	STRPO_0485	STRPO_0484	Conserved hypothetical integral membrane protein TIGR02185; Identified by match to protein family HMM PF09605; match to protein family HMM TIGR02185.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.915
EGJ27392.1	yfiR	STRPO_0485	STRPO_0482	Conserved hypothetical integral membrane protein TIGR02185; Identified by match to protein family HMM PF09605; match to protein family HMM TIGR02185.	Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.	0.819
EGJ27392.1	ykoD_1	STRPO_0485	STRPO_0486	Conserved hypothetical integral membrane protein TIGR02185; Identified by match to protein family HMM PF09605; match to protein family HMM TIGR02185.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.930
EGJ27775.1	EGJ28060.1	STRPO_0490	STRPO_0483	AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.469
EGJ27775.1	msbA	STRPO_0490	STRPO_0484	AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.469
EGJ28060.1	EGJ26925.1	STRPO_0483	STRPO_0487	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Cobalt transport protein; Identified by match to protein family HMM PF02361.	0.937
EGJ28060.1	EGJ27103.1	STRPO_0483	STRPO_1239	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.778
EGJ28060.1	EGJ27392.1	STRPO_0483	STRPO_0485	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Conserved hypothetical integral membrane protein TIGR02185; Identified by match to protein family HMM PF09605; match to protein family HMM TIGR02185.	0.918
EGJ28060.1	EGJ27775.1	STRPO_0483	STRPO_0490	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550.	0.469
EGJ28060.1	atmD	STRPO_0483	STRPO_0922	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Methionine importer (TC 3.A.1.24) family.	0.605