STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
degV_1EDD domain protein, DegV family; Identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762. (283 aa)    
Predicted Functional Partners:
EGJ27059.1
DAK2 domain fusion protein YloV; Identified by match to protein family HMM PF02734; match to protein family HMM TIGR03599.
   0.983
EGJ28217.1
Identified by match to protein family HMM PF06619.
  
    0.799
EGJ27083.1
Hypothetical protein.
       0.621
EGJ27533.1
Identified by match to protein family HMM PF03780.
 
    0.611
EGJ27224.1
Muramidase-2; Identified by match to protein family HMM PF01832.
       0.545
yjjK
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
     
 0.528
cca
Putative tRNA adenylyltransferase; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate.
       0.522
rex
Putative redox-sensing transcriptional repressor rex; Modulates transcription in response to changes in cellular NADH/NAD(+) redox state.
  
   
 0.451
Your Current Organism:
Streptococcus porcinus
NCBI taxonomy Id: 873448
Other names: S. porcinus str. Jelinkova 176, Streptococcus porcinus str. Jelinkova 176, Streptococcus porcinus strain Jelinkova 176
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.