STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGJ28217.1Identified by match to protein family HMM PF06619. (126 aa)    
Predicted Functional Partners:
degV_1
EDD domain protein, DegV family; Identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762.
  
    0.799
EGJ28120.1
Identified by match to protein family HMM PF06279.
  
     0.687
xerD
Site-specific tyrosine recombinase XerD-like protein; Putative tyrosine recombinase. Not involved in the cutting and rejoining of the recombining DNA molecules on dif(SL) site. Belongs to the 'phage' integrase family. XerD-like subfamily.
  
     0.667
EGJ27083.1
Hypothetical protein.
       0.621
EGJ27224.1
Muramidase-2; Identified by match to protein family HMM PF01832.
 
     0.610
EGJ26455.1
Septum formation initiator; Identified by match to protein family HMM PF04977.
  
     0.608
comX
Competence-specific sigma factor ComX.
  
     0.606
EGJ27978.1
Hypothetical protein.
  
     0.601
EGJ26584.1
Hypothetical protein.
  
     0.589
EGJ28248.1
Gram-positive signal peptide protein, YSIRK family; Identified by match to protein family HMM PF07949.
 
     0.587
Your Current Organism:
Streptococcus porcinus
NCBI taxonomy Id: 873448
Other names: S. porcinus str. Jelinkova 176, Streptococcus porcinus str. Jelinkova 176, Streptococcus porcinus strain Jelinkova 176
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.