Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EGJ26575.1 | aroC | STRPO_0497 | STRPO_0558 | Putative shikimate dehydrogenase; Identified by match to protein family HMM PF01488; match to protein family HMM PF08501. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.926 |
| EGJ26575.1 | aroD_1 | STRPO_0497 | STRPO_0559 | Putative shikimate dehydrogenase; Identified by match to protein family HMM PF01488; match to protein family HMM PF08501. | 3-dehydroquinate dehydratase, type I; Involved in the third step of the chorismate pathway, which leads to the biosynthesis of aromatic amino acids. Catalyzes the cis- dehydration of 3-dehydroquinate (DHQ) and introduces the first double bond of the aromatic ring to yield 3-dehydroshikimate. Belongs to the type-I 3-dehydroquinase family. | 0.703 |
| EGJ26575.1 | aroD_2 | STRPO_0497 | STRPO_1844 | Putative shikimate dehydrogenase; Identified by match to protein family HMM PF01488; match to protein family HMM PF08501. | 3-dehydroquinate dehydratase, type I; Identified by match to protein family HMM PF01487; match to protein family HMM TIGR01093. | 0.666 |
| EGJ26575.1 | aroE | STRPO_0497 | STRPO_1843 | Putative shikimate dehydrogenase; Identified by match to protein family HMM PF01488; match to protein family HMM PF08501. | Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.545 |
| EGJ26575.1 | aroK | STRPO_0497 | STRPO_2016 | Putative shikimate dehydrogenase; Identified by match to protein family HMM PF01488; match to protein family HMM PF08501. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.874 |
| EGJ26575.1 | pabB | STRPO_0497 | STRPO_1672 | Putative shikimate dehydrogenase; Identified by match to protein family HMM PF01488; match to protein family HMM PF08501. | Aminodeoxychorismate synthase, component I; Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00553. | 0.888 |
| EGJ26635.1 | aroC | STRPO_1841 | STRPO_0558 | Transporter, major facilitator family protein; Identified by match to protein family HMM PF07690. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.436 |
| EGJ26635.1 | aroD_1 | STRPO_1841 | STRPO_0559 | Transporter, major facilitator family protein; Identified by match to protein family HMM PF07690. | 3-dehydroquinate dehydratase, type I; Involved in the third step of the chorismate pathway, which leads to the biosynthesis of aromatic amino acids. Catalyzes the cis- dehydration of 3-dehydroquinate (DHQ) and introduces the first double bond of the aromatic ring to yield 3-dehydroshikimate. Belongs to the type-I 3-dehydroquinase family. | 0.656 |
| EGJ26635.1 | aroD_2 | STRPO_1841 | STRPO_1844 | Transporter, major facilitator family protein; Identified by match to protein family HMM PF07690. | 3-dehydroquinate dehydratase, type I; Identified by match to protein family HMM PF01487; match to protein family HMM TIGR01093. | 0.829 |
| EGJ26635.1 | aroE | STRPO_1841 | STRPO_1843 | Transporter, major facilitator family protein; Identified by match to protein family HMM PF07690. | Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.903 |
| EGJ26635.1 | pabB | STRPO_1841 | STRPO_1672 | Transporter, major facilitator family protein; Identified by match to protein family HMM PF07690. | Aminodeoxychorismate synthase, component I; Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00553. | 0.773 |
| EGJ26635.1 | ydiM | STRPO_1841 | STRPO_1842 | Transporter, major facilitator family protein; Identified by match to protein family HMM PF07690. | Transporter, major facilitator family protein; Identified by match to protein family HMM PF07690. | 0.721 |
| aroC | EGJ26575.1 | STRPO_0558 | STRPO_0497 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Putative shikimate dehydrogenase; Identified by match to protein family HMM PF01488; match to protein family HMM PF08501. | 0.926 |
| aroC | EGJ26635.1 | STRPO_0558 | STRPO_1841 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Transporter, major facilitator family protein; Identified by match to protein family HMM PF07690. | 0.436 |
| aroC | aroD_1 | STRPO_0558 | STRPO_0559 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 3-dehydroquinate dehydratase, type I; Involved in the third step of the chorismate pathway, which leads to the biosynthesis of aromatic amino acids. Catalyzes the cis- dehydration of 3-dehydroquinate (DHQ) and introduces the first double bond of the aromatic ring to yield 3-dehydroshikimate. Belongs to the type-I 3-dehydroquinase family. | 0.722 |
| aroC | aroE | STRPO_0558 | STRPO_1843 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.879 |
| aroC | aroK | STRPO_0558 | STRPO_2016 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.955 |
| aroC | ltaS | STRPO_0558 | STRPO_0561 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Glycerol phosphate lipoteichoic acid synthase 2; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00884. | 0.444 |
| aroC | pabB | STRPO_0558 | STRPO_1672 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Aminodeoxychorismate synthase, component I; Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00553. | 0.963 |
| aroC | rlmI | STRPO_0558 | STRPO_0560 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Hypothetical protein. | 0.579 |
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