Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
manY-2PTS system protein sorbose-specific iic component; Identified by match to protein family HMM PF03609. (293 aa)    
Predicted Functional Partners:
manX_2
PTS system protein fructose IIA component; Identified by match to protein family HMM PF03610.
 
 0.999
manZ-2
PTS system protein mannose/fructose/sorbose family IID component; Identified by match to protein family HMM PF03613.
 0.999
manX
PTS system protein mannose-specific EIIAB component; Identified by match to protein family HMM PF03610; match to protein family HMM PF03830.
 
 0.999
manZ
Mannose permease IID component; Identified by match to protein family HMM PF03613; match to protein family HMM TIGR00828.
 0.999
levE
PTS system protein sorbose subfamily IIB component; Identified by match to protein family HMM PF03830.
 
 
 0.988
manY
Mannose permease IIC component; Identified by match to protein family HMM PF03609.
  
  
 
0.917
ptsH
Phosphocarrier protein HPr; Identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003.
    
 0.916
manA
Mannose-6-phosphate isomerase, class I; Identified by match to protein family HMM PF01238; match to protein family HMM TIGR00218; Belongs to the mannose-6-phosphate isomerase type 1 family.
    
  0.906
agaS
Sugar isomerase, AgaS family; Identified by match to protein family HMM PF01380.
 
  
 0.842
gmuE
Fructokinase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00480.
     
  0.800
Your Current Organism:
Streptococcus porcinus
NCBI taxonomy Id: 873448
Other names: S. porcinus str. Jelinkova 176, Streptococcus porcinus str. Jelinkova 176, Streptococcus porcinus strain Jelinkova 176
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