STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGJ27168.1Identified by match to protein family HMM PF06210. (256 aa)    
Predicted Functional Partners:
whiA
Hypothetical protein; Involved in cell division and chromosome segregation.
       0.601
EGJ26736.1
Hypothetical protein; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.
       0.601
yvcJ
Hypothetical protein; Displays ATPase and GTPase activities.
       0.601
EGJ27055.1
CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517.
  
     0.539
asnS
asparagine--tRNA ligase; Identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00457.
       0.491
EGJ27447.1
Oxidoreductase NAD-binding domain protein; Identified by match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM PF08022.
  
     0.424
pepD
Dipeptidase; Identified by match to protein family HMM PF03577.
       0.422
aspB
Aspartate transaminase; Identified by match to protein family HMM PF00155.
       0.414
Your Current Organism:
Streptococcus porcinus
NCBI taxonomy Id: 873448
Other names: S. porcinus str. Jelinkova 176, Streptococcus porcinus str. Jelinkova 176, Streptococcus porcinus strain Jelinkova 176
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