STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGJ27769.1ABC transporter, ATP-binding protein. (53 aa)    
Predicted Functional Partners:
EGJ26648.1
Permease; Identified by match to protein family HMM PF03773.
       0.657
EGJ28063.1
Identified by match to protein family HMM PF09323; match to protein family HMM TIGR03943.
       0.657
EGJ27488.1
Identified by match to protein family HMM PF00903.
       0.497
EGJ28333.1
Identified by match to protein family HMM PF06172.
       0.422
hsrA
Transporter, major facilitator family protein; Identified by match to protein family HMM PF07690.
       0.418
Your Current Organism:
Streptococcus porcinus
NCBI taxonomy Id: 873448
Other names: S. porcinus str. Jelinkova 176, Streptococcus porcinus str. Jelinkova 176, Streptococcus porcinus strain Jelinkova 176
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