STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGJ27441.1Hypothetical protein. (341 aa)    
Predicted Functional Partners:
EGJ27502.1
Hypothetical protein.
  
     0.712
EGJ27986.1
Bifunctional DNA primase/polymerase, N-terminal domain protein; Identified by match to protein family HMM PF08708; match to protein family HMM PF09250.
  
     0.707
EGJ28166.1
YcaO-like family; Identified by match to protein family HMM PF02624; match to protein family HMM TIGR03604.
  
     0.699
speB
Streptopain; Identified by match to protein family HMM PF01640.
  
     0.656
EGJ27496.1
Identified by match to protein family HMM PF01261.
  
     0.638
rgg
Transcriptional activator, Rgg/GadR/MutR family, C-terminal domain protein; Identified by match to protein family HMM TIGR01716.
  
     0.607
satE
Hypothetical protein.
  
     0.575
EGJ26403.1
M protein trans-acting positive regulator; Identified by match to protein family HMM PF05043.
  
     0.575
comX
Competence-specific sigma factor ComX.
  
     0.574
dhaM
Dihydroxyacetone kinase, phosphotransfer subunit; Identified by match to protein family HMM PF03610; match to protein family HMM TIGR02364.
       0.557
Your Current Organism:
Streptococcus porcinus
NCBI taxonomy Id: 873448
Other names: S. porcinus str. Jelinkova 176, Streptococcus porcinus str. Jelinkova 176, Streptococcus porcinus strain Jelinkova 176
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.