STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfkOIdentified by match to protein family HMM PF00881. (221 aa)    
Predicted Functional Partners:
gloA
Putative lactoylglutathione lyase; Identified by match to protein family HMM PF00903.
  
    0.905
EGJ27775.1
AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550.
   
 
 0.789
EGJ27907.1
Identified by match to protein family HMM PF00724; match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF04205; match to protein family HMM PF07992.
 
 
 0.657
birA
biotin--[acetyl-CoA-carboxylase] ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
    0.639
EGJ28166.1
YcaO-like family; Identified by match to protein family HMM PF02624; match to protein family HMM TIGR03604.
  
  
 0.538
EGJ27824.1
Hypothetical protein.
 
 
 0.534
celA
6-phospho-beta-glucosidase; Identified by match to protein family HMM PF00232; Belongs to the glycosyl hydrolase 1 family.
  
    0.524
EGJ26736.1
Hypothetical protein; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.
  
 
 0.466
EGJ28252.1
ABC-2 type transporter; Identified by match to protein family HMM PF01061.
  
  
 0.460
sagI
ABC-2 type transporter; Identified by match to protein family HMM PF01061.
  
  
 0.460
Your Current Organism:
Streptococcus porcinus
NCBI taxonomy Id: 873448
Other names: S. porcinus str. Jelinkova 176, Streptococcus porcinus str. Jelinkova 176, Streptococcus porcinus strain Jelinkova 176
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