Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
yozEIdentified by match to protein family HMM PF06855; Belongs to the UPF0346 family. (71 aa)    
Predicted Functional Partners:
msrA
Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
       0.852
cvfB
Putative conserved virulence factor B; Belongs to the CvfB family.
     
 0.723
EGJ27000.1
Identified by match to protein family HMM PF00657.
 
  
 0.679
EGJ27177.1
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
  
     0.655
yqgQ
Identified by match to protein family HMM PF06014.
  
   
 0.650
frr
Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.
       0.618
pyrH
UMP kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
       0.599
ybeZ
Identified by match to protein family HMM PF02562.
       0.567
EGJ27863.1
Identified by match to protein family HMM PF07288; Belongs to the UPF0356 family.
  
   
 0.554
EGJ28209.1
Hypothetical protein.
 
   
 0.551
Your Current Organism:
Streptococcus porcinus
NCBI taxonomy Id: 873448
Other names: S. porcinus str. Jelinkova 176, Streptococcus porcinus str. Jelinkova 176, Streptococcus porcinus strain Jelinkova 176
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