STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yaaTPSP1 C-terminal domain protein; Identified by match to protein family HMM PF04468. (266 aa)    
Predicted Functional Partners:
rny
YmdA/YtgF family protein; Endoribonuclease that initiates mRNA decay.
 
  
 0.842
holB
DNA polymerase III, delta' subunit.
  
    0.828
yabA
Hypothetical protein; Involved in initiation control of chromosome replication. Belongs to the YabA family.
  
    0.826
rsmI
S-adenosylmethionine-dependent methyltransferase, YraL family; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
    0.813
tmk
dTMP kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
  
    0.752
EGJ28332.1
Identified by match to protein family HMM PF07050; Belongs to the UPF0342 family.
 
   
 0.660
EGJ27865.1
CBS domain protein; Identified by match to protein family HMM PF00571; match to protein family HMM PF01842.
 
     0.625
EGJ27098.1
Hypothetical protein.
       0.524
livF
High-affinity branched-chain amino acid ABC transporter, ATP-binding protein LivF; Identified by match to protein family HMM PF00005.
       0.473
lptB
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
       0.473
Your Current Organism:
Streptococcus porcinus
NCBI taxonomy Id: 873448
Other names: S. porcinus str. Jelinkova 176, Streptococcus porcinus str. Jelinkova 176, Streptococcus porcinus strain Jelinkova 176
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.