Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EGJ27430.1Putative membrane protein. (261 aa)    
Predicted Functional Partners:
ybhF
Putative bacitracin ABC transporter, ATP-binding protein BcrA; Identified by match to protein family HMM PF00005.
 
 
 0.966
EGJ27164.1
Radical SAM protein, TIGR01212 family; Identified by match to protein family HMM PF04055; match to protein family HMM TIGR01212.
 
     0.816
EGJ27085.1
Putative rRNA methylase; Identified by match to protein family HMM PF06962; match to protein family HMM PF08241.
       0.775
EGJ26664.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
 0.678
EGJ26757.1
Putative bacitracin ABC transporter, ATP-binding protein BcrA; Identified by match to protein family HMM PF00005.
  
 
 0.636
sagG
ABC transporter, ATP-binding protein SagG; Identified by match to protein family HMM PF00005.
  
 
 0.636
ecsA_3
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 
 0.618
ecsA_2
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 
 0.618
ecsA
ABC transporter, ATP-binding protein EcsA; Identified by match to protein family HMM PF00005.
  
 
 0.618
ribU
Hypothetical protein; Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins; Belongs to the prokaryotic riboflavin transporter (P-RFT) (TC 2.A.87) family.
       0.582
Your Current Organism:
Streptococcus porcinus
NCBI taxonomy Id: 873448
Other names: S. porcinus str. Jelinkova 176, Streptococcus porcinus str. Jelinkova 176, Streptococcus porcinus strain Jelinkova 176
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