STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGJ28172.1ABC transporter, permease protein; Identified by match to protein family HMM PF00528. (296 aa)    
Predicted Functional Partners:
yesO_2
ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.
 0.998
ycjP_2
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 0.997
msmK
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.
 
 0.992
malG
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 0.991
ycjP_1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 0.978
malX
ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.
 
 0.969
yesO_1
ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.
 
 0.953
EGJ27640.1
Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.
  
    0.780
rafA
Alpha-galactosidase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF02065.
  
    0.780
sacX
PTS system protein sucrose-specific IIBC component; Identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR01996.
   
 
 0.685
Your Current Organism:
Streptococcus porcinus
NCBI taxonomy Id: 873448
Other names: S. porcinus str. Jelinkova 176, Streptococcus porcinus str. Jelinkova 176, Streptococcus porcinus strain Jelinkova 176
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.