STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araC_2Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165; match to protein family HMM PF02311. (277 aa)    
Predicted Functional Partners:
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.809
ypdA
Histidine kinase; Identified by match to protein family HMM PF06580.
  
  
 0.777
EGJ26586.1
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00072; match to protein family HMM PF00165.
  
  
  0.735
yesO_2
ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.
 
   
 0.704
EGJ27640.1
Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.
 
     0.655
rafA
Alpha-galactosidase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF02065.
 
     0.649
EGJ27990.1
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.
 
  
 
0.582
ycjP_2
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
  
 0.582
EGJ28172.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
  
 0.548
yehU
LytS/YhcK-type transmembrane receptor domain protein; Identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF06580; match to protein family HMM PF07694.
  
  
  0.501
Your Current Organism:
Streptococcus porcinus
NCBI taxonomy Id: 873448
Other names: S. porcinus str. Jelinkova 176, Streptococcus porcinus str. Jelinkova 176, Streptococcus porcinus strain Jelinkova 176
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.