STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dnaB-2Replication initiation and membrane attachment protein, DnaB/DnaD family; Identified by match to protein family HMM PF07261. (395 aa)    
Predicted Functional Partners:
dnaI
Primosomal protein DnaI; Identified by match to protein family HMM PF07319.
 
  
 0.891
nrdR
Transcriptional regulator NrdR; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.
  
  
 0.863
EGJ26455.1
Septum formation initiator; Identified by match to protein family HMM PF04977.
  
     0.711
EGJ27740.1
Glycosyl hydrolase family 25; Identified by match to protein family HMM PF01183.
  
     0.702
EGJ27978.1
Hypothetical protein.
  
     0.657
xerD
Site-specific tyrosine recombinase XerD-like protein; Putative tyrosine recombinase. Not involved in the cutting and rejoining of the recombining DNA molecules on dif(SL) site. Belongs to the 'phage' integrase family. XerD-like subfamily.
  
     0.641
der
Ribosome biogenesis GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
       0.632
EGJ27972.1
LPXTG-motif cell wall anchor domain protein.
  
     0.632
EGJ27076.1
CHAP domain protein; Identified by match to protein family HMM PF05257; match to protein family HMM PF08460.
  
     0.624
EGJ28166.1
YcaO-like family; Identified by match to protein family HMM PF02624; match to protein family HMM TIGR03604.
  
     0.620
Your Current Organism:
Streptococcus porcinus
NCBI taxonomy Id: 873448
Other names: S. porcinus str. Jelinkova 176, Streptococcus porcinus str. Jelinkova 176, Streptococcus porcinus strain Jelinkova 176
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.