comFC protein (Streptococcus porcinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

comFC

comF family protein. (226 aa)

Predicted Functional Partners:

comFA

0.910

EGJ27632.1

0.752

dprA

0.725

radC

0.703

nagA

0.653

raiA

0.621

yigZ

0.614

EGJ27475.1

0.556

comEA

0.486

EGJ27474.1

0.471

Your Current Organism:

Streptococcus porcinus

NCBI taxonomy Id: 873448
Other names: S. porcinus str. Jelinkova 176, Streptococcus porcinus str. Jelinkova 176, Streptococcus porcinus strain Jelinkova 176

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EGJ27474.1	EGJ27475.1	STRPO_1517	STRPO_1518	Putative ComG operon protein 1; Identified by match to protein family HMM PF00437.	Type II secretion system protein F domain protein; Identified by match to protein family HMM PF00482.	0.998
EGJ27474.1	EGJ27632.1	STRPO_1517	STRPO_1970	Putative ComG operon protein 1; Identified by match to protein family HMM PF00437.	DNA internalization competence protein ComEC/Rec2-like protein; Identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361.	0.746
EGJ27474.1	comEA	STRPO_1517	STRPO_1969	Putative ComG operon protein 1; Identified by match to protein family HMM PF00437.	ComE operon protein 1; Identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426.	0.776
EGJ27474.1	comFA	STRPO_1517	STRPO_0948	Putative ComG operon protein 1; Identified by match to protein family HMM PF00437.	Putative ComF operon protein 1; Identified by match to protein family HMM PF00271.	0.781
EGJ27474.1	comFC	STRPO_1517	STRPO_0947	Putative ComG operon protein 1; Identified by match to protein family HMM PF00437.	comF family protein.	0.471
EGJ27474.1	dprA	STRPO_1517	STRPO_0388	Putative ComG operon protein 1; Identified by match to protein family HMM PF00437.	DNA protecting protein DprA; Identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732.	0.653
EGJ27475.1	EGJ27474.1	STRPO_1518	STRPO_1517	Type II secretion system protein F domain protein; Identified by match to protein family HMM PF00482.	Putative ComG operon protein 1; Identified by match to protein family HMM PF00437.	0.998
EGJ27475.1	EGJ27632.1	STRPO_1518	STRPO_1970	Type II secretion system protein F domain protein; Identified by match to protein family HMM PF00482.	DNA internalization competence protein ComEC/Rec2-like protein; Identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361.	0.858
EGJ27475.1	comEA	STRPO_1518	STRPO_1969	Type II secretion system protein F domain protein; Identified by match to protein family HMM PF00482.	ComE operon protein 1; Identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426.	0.760
EGJ27475.1	comFA	STRPO_1518	STRPO_0948	Type II secretion system protein F domain protein; Identified by match to protein family HMM PF00482.	Putative ComF operon protein 1; Identified by match to protein family HMM PF00271.	0.688
EGJ27475.1	comFC	STRPO_1518	STRPO_0947	Type II secretion system protein F domain protein; Identified by match to protein family HMM PF00482.	comF family protein.	0.556
EGJ27475.1	dprA	STRPO_1518	STRPO_0388	Type II secretion system protein F domain protein; Identified by match to protein family HMM PF00482.	DNA protecting protein DprA; Identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732.	0.514
EGJ27632.1	EGJ27474.1	STRPO_1970	STRPO_1517	DNA internalization competence protein ComEC/Rec2-like protein; Identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361.	Putative ComG operon protein 1; Identified by match to protein family HMM PF00437.	0.746
EGJ27632.1	EGJ27475.1	STRPO_1970	STRPO_1518	DNA internalization competence protein ComEC/Rec2-like protein; Identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361.	Type II secretion system protein F domain protein; Identified by match to protein family HMM PF00482.	0.858
EGJ27632.1	comEA	STRPO_1970	STRPO_1969	DNA internalization competence protein ComEC/Rec2-like protein; Identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361.	ComE operon protein 1; Identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426.	0.920
EGJ27632.1	comFA	STRPO_1970	STRPO_0948	DNA internalization competence protein ComEC/Rec2-like protein; Identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361.	Putative ComF operon protein 1; Identified by match to protein family HMM PF00271.	0.598
EGJ27632.1	comFC	STRPO_1970	STRPO_0947	DNA internalization competence protein ComEC/Rec2-like protein; Identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361.	comF family protein.	0.752
EGJ27632.1	dprA	STRPO_1970	STRPO_0388	DNA internalization competence protein ComEC/Rec2-like protein; Identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361.	DNA protecting protein DprA; Identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732.	0.731
EGJ27632.1	radC	STRPO_1970	STRPO_0456	DNA internalization competence protein ComEC/Rec2-like protein; Identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361.	DNA repair protein RadC; Identified by match to protein family HMM PF04002; match to protein family HMM TIGR00608; Belongs to the UPF0758 family.	0.483
comEA	EGJ27474.1	STRPO_1969	STRPO_1517	ComE operon protein 1; Identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426.	Putative ComG operon protein 1; Identified by match to protein family HMM PF00437.	0.776