STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
comFAPutative ComF operon protein 1; Identified by match to protein family HMM PF00271. (433 aa)    
Predicted Functional Partners:
comFC
comF family protein.
 
  
 0.910
comYC
Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.
  
  
 0.794
EGJ27474.1
Putative ComG operon protein 1; Identified by match to protein family HMM PF00437.
   
  
 0.781
comEA
ComE operon protein 1; Identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426.
   
  
 0.715
EGJ26990.1
Hypothetical protein.
   
  
 0.706
EGJ27475.1
Type II secretion system protein F domain protein; Identified by match to protein family HMM PF00482.
   
  
 0.688
EGJ27858.1
Hypothetical protein.
   
  
 0.657
gpsB
DivIVA domain protein; Divisome component that associates with the complex late in its assembly, after the Z-ring is formed, and is dependent on DivIC and PBP2B for its recruitment to the divisome. Together with EzrA, is a key component of the system that regulates PBP1 localization during cell cycle progression. Its main role could be the removal of PBP1 from the cell pole after pole maturation is completed. Also contributes to the recruitment of PBP1 to the division complex. Not essential for septum formation.
  
     0.647
raiA
Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
       0.611
yigZ
Identified by match to protein family HMM PF01205; match to protein family HMM TIGR00257.
     
 0.610
Your Current Organism:
Streptococcus porcinus
NCBI taxonomy Id: 873448
Other names: S. porcinus str. Jelinkova 176, Streptococcus porcinus str. Jelinkova 176, Streptococcus porcinus strain Jelinkova 176
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.